bd-medicine-scraper

Overview

Welcome to the bd-medicine-scraper repository!

In this project, I scraped Medicine data (from medex.com.bd) using scrapy and integrated it with Django REST Framework. The data is stored in a PostgreSQL database. I designed the scraper in a way to keep the relations between models.

I also customized the django admin panels, added additional features such as -

• auto complete lookup relational fields
• custom filtering (alphabetical, model property)
• bulk actions (export to csv)

Other Customizations:

• custom scrapy command to run scrapy spiders from django command line. (ex- python manage.py <spider_name>)
• custom django commands
  • to export models to csv. (python manage.py <export_model_name> <export_data_path>)

     python manage.py export_medicine_data /home/ahmed/Desktop/medicine_data.csv
    

  • to export generic monograph PDFs

    python manage.py export_generics_monograph
    

I also added proxy configuration to scrapy.

Run

Create a python virtual environment and run these commands from root directory-

pip insrall -r requirements.txt

This will run the django app-

python manage.py runserver

NB: Migrate before running the app

python manage.py makemigrations && python manage.py migrate

To run all spiders-

python run_crawler.py

To run a specific spider-

python manage.py <spider_name>

ex - python manage.py med

Data Analytics

Dataset

The scraped dataset is available in kaggle -

• Assorted Medicine Dataset of Bangladesh

The dataset has 6 CSV files - Here is a list of the CSV files with their featured columns:

1. medicine.csv (21k+ entries)
   • brand name
   • medicine type (allopathic or herbal)
   • generic
   • strength
   • manufacturer
   • package container (unit price and pack info)
   • Package Size (unit price)
2. manufacturer.csv (245 entries)
   • name
3. indication.csv (2k+ entries)
   • name
4. generic.csv (~1700-1800 entries)
   • name
   • monographic link (PDF URL)
   • drug class
   • indication
   • generic details such as "Indication description", "Pharmacology description", "Dosage & Administration description" etc.
5. drug class.csv (~400 entries)
   • name
6. dosage form.csv (~120 entries)
   • name

Analytics

Bangladesh Medicine Analytics - Notebook on Kaggle

Tests

Workflow script - django-ci.yml

Run the tests using:

coverage run --omit='*/venv/*' manage.py test

or

python manage.py test

Check the coverage

coverage html

Built With

Django==3.2.12
djangorestframework==3.12.2
django-admin-autocomplete-filter==0.7.1
django-filter==21.1
coverage==6.2
Scrapy==2.4.1
scrapy-djangoitem==1.1.1
psycopg2==2.9.3

Preview