Learn more on the nf-neuro website !

Welcome to the nf-neuro project ! An open-source Nextflow modules and workflows repository for neuroimaging maintained by the SCIL team. Our goal is to provide Nextflow DSL2 optimized processing modules and workflows tailored to neuroimaging data.

nf-neuro aligns with the nf-core framework to streamline the development of neuroimaging pipelines !

• Extensive guidelines for the development of processing modules and workflows
• Well-designed and thorough tutorials with step-by-step walkthroughs
• Convenient distribution tools to install and upgrade pipeline components with ease

Why nf-neuro ?

• All-in-one library for automated neuroimaging software, from dependencies to pipelines
• Development practices to guarantee processing efficiency, reliability and reproducibility
• Embeded quality assurance, continuous development and integration procedures
• Off-the-shelf compliance with HPC clusters and cloud computing infrastructures

Our latest publications

• (2025) nf-neuro: Developing Maintainable Pipelines for Seamless Processing of Diffusion MRI.

  Valcourt Caron, A; Boré, A; Edde, M; Gagnon, A; Thoumyre, S; Royer, A; Rheault, F; Descoteaux, M.

  Proceedings of the ISMRM Workshop on 40 Years of Diffusion: Past, Present & Future Perspectives

• ([2024]()) Mining diamonds with wooden hammers : getting diffusion MRI processing into the age of steel

  Valcourt Caron, A; Boré, A; Edde, M; Thoumyre, S; Gagnon, A; Rheault, F; Descoteaux, M.

  Proceedings of the 2024 Boston Nextflow Summit